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@@ -101,7 +101,7 @@ for blob in lst_curated_blobs:
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entities = list(UMLS_tuis_entity.keys())
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entities = list(UMLS_tuis_entity.keys())
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TUIs = list(UMLS_tuis_entity.values())
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TUIs = list(UMLS_tuis_entity.values())
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df_entities = pd.DataFrame(data={'entity': entities, 'TUIs': TUIs})
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df_entities = pd.DataFrame(data={'entity': entities, 'TUIs': TUIs})
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- df_reference_TUIs = pd.read_csv('~/data/UMLS_tuis.csv')
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+ df_reference_TUIs = pd.read_csv('./utils/UMLS_tuis.csv')
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df_annotated_text_entities = pd.merge(df_entities, df_reference_TUIs, how='inner', on=['TUIs'])
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df_annotated_text_entities = pd.merge(df_entities, df_reference_TUIs, how='inner', on=['TUIs'])
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# Upload entities to datastore
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# Upload entities to datastore
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Aziz Ketari